A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity checks, NCBI taxonomy and GTDB integration and support for parallel downloads.

Genomics Workflows on AWS

CUT&RUN and CUT&Tag data processing and analysis

Analysis pipelines for genomic sequencing data

Data Wrangling and Processing for Genomics

Bioinformatics analysis scripts, workflows, general code examples

genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.

Workshop on Genomics - Genomics Adventure

Micro 612 genomics workshop

Platform for Oncogenomic Reporting and Interpretation (PORI)

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment

Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation

Big Compute Learning Labs

Genetic Map Comparison

the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics

New computational framework to process and analyze KAS-seq and spKAS-seq data.

Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.