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Clarification Needed on Generation of hpo.annotation.tab File for HPO Enrichment Analysis

Status: Open.

#312 In tanghaibao/goatools;

· aybugealtay opened on Aug 7, 2025

Corrected P-values

Status: Open.

#309 In tanghaibao/goatools;

· raunimarques opened on Feb 24, 2025

No TAXID for Ecoli and incompatibility of the Ecoli specific annotation file

Status: Open.

#306 In tanghaibao/goatools;

· FH96 opened on Oct 30, 2024

I couldn't get "regulates" ancestors terms

bug

Status: Open.

#304 In tanghaibao/goatools;

· 10myl200 opened on Sep 16, 2024

Keeping terms not in DAG

Status: Open.

#291 In tanghaibao/goatools;

· Prunoideae opened on Apr 27, 2024

Optimising go term tests

Status: Open.

#272 In tanghaibao/goatools;

· francicco opened on Jun 15, 2023

What's the point of removing genes with identical identifiers?

Status: Open.

#271 In tanghaibao/goatools;

· shelkmike opened on Jun 2, 2023

Conditional tests?

enhancement

Status: Open.

#264 In tanghaibao/goatools;

· sjfleming opened on Feb 24, 2023

Keep on receiving **FATAL: NO POPULATION ITEMS SEEN IN THE ANNOTATIONS in my current work

Status: Open.

#260 In tanghaibao/goatools;

· HelloWorldLTY opened on Feb 7, 2023

Different results when restricting background set to only include genes with at least one annotation term

Status: Open.

#259 In tanghaibao/goatools;

· Maryam-Haghani opened on Jan 27, 2023

Error: no population items seen in the annotations when using GAF file

Status: Open.

#254 In tanghaibao/goatools;

· jlastoll opened on Dec 6, 2022

Some questions about gene selection

Status: Open.

#249 In tanghaibao/goatools;

· HelloWorldLTY opened on Oct 15, 2022