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@ding-lab

Li Ding's Lab

Li Ding's Lab at the Washington University School of Medicine

Popular repositories Loading

  1. msisensor msisensor Public archive

    microsatellite instability detection using tumor only or paired tumor-normal data

    C++ 132 55

  2. CharGer CharGer Public

    Characterization of Germline variants

    Python 100 37

  3. MuSiC2 MuSiC2 Public

    identifying mutational significance in cancer genomes

    Perl 62 20

  4. hotspot3d hotspot3d Public

    3D hotspot mutation proximity analysis tool

    Perl 53 26

  5. PanCanAtlasGermline PanCanAtlasGermline Public

    R 44 14

  6. PanCan_snATAC_publication PanCan_snATAC_publication Public

    Jupyter Notebook 21 5

Repositories

Showing 10 of 145 repositories
  • importGDC Public

    Automated download of CPTAC3 data from GDC

    ding-lab/importGDC’s past year of commit activity
    Shell 2 0 0 0 Updated Mar 25, 2026
  • GDC.case.discover Public

    Obtain submitted reads and clinical info associated with CPTAC3 cases

    ding-lab/GDC.case.discover’s past year of commit activity
    Shell 1 GPL-3.0 2 0 0 Updated Mar 25, 2026
  • germlinewrapper Public

    detect germline variants from normal samples

    ding-lab/germlinewrapper’s past year of commit activity
    Perl 4 GPL-3.0 4 0 0 Updated Mar 17, 2026
  • somaticwrapper Public

    Detect somatic variants from tumor and normal WGS/WXS data

    ding-lab/somaticwrapper’s past year of commit activity
    Perl 19 AGPL-3.0 9 1 0 Updated Mar 17, 2026
  • FSAudit Public

    Filesystem audit visualization

    ding-lab/FSAudit’s past year of commit activity
    Shell 1 0 0 0 Updated Feb 23, 2026
  • SRescue Public

    Pipeline for SR-LR integration

    ding-lab/SRescue’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Feb 17, 2026
  • SVLover Public

    LOng read Variant ExploreR

    ding-lab/SVLover’s past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Feb 17, 2026
  • VirusScan Public

    VirusScan Pipeline

    ding-lab/VirusScan’s past year of commit activity
    Perl 12 7 0 0 Updated Feb 7, 2026
  • mCRC_publication Public
    ding-lab/mCRC_publication’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 5, 2026
  • ffpefiltering Public

    Use MicroSec for FFPE filtering

    ding-lab/ffpefiltering’s past year of commit activity
    R 0 1 0 0 Updated Feb 5, 2026
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